outputProbFile<<"PROBLEM!! with Map "<<iRefMap<<"Numerical Integrated Probability = 0.0; Try re-normalizing experimental map\n";
outputProbFile<<"PROBLEM!! with Map "<<iRefMap<<"Numerical Integrated Probability = 0.0; \n - Try re-normalizing experimental map\n-looking at your model density. Maybe RADIUS IS LESS THAN PIXEL SIZE \n If so try KEYWORD NO_PROJECT_RADIUS in parameter inputfile";
outputProbFile<<"RefMap: "<<iRefMap<<"Most probabily Numerical Constant Out of Float-point range: "<<pProbMap.Constoadd<<"\n";}
@@ -215,11 +216,11 @@ int bioem_param::readParameters(const char* fileinput,const char* fileangles)
cout<<"Start PSF "<<startGridCTF_amp<<"\n";
yesSTamp=true;
}
elseif(strcmp(token,"GRIDSPACE_PSF_AMP")==0)
elseif(strcmp(token,"END_PSF_AMP")==0)
{
token=strtok(NULL," ");
gridCTF_amp=atof(token);
cout<<"Grid Space PSF "<<gridCTF_amp<<"\n";
endGridCTF_amp=atof(token);
cout<<"End amplitud grid "<<endGridCTF_amp<<"\n";
yesGSPamp=true;
}
elseif(strcmp(token,"MAX_D_CENTER")==0)
...
...
@@ -333,9 +334,9 @@ int bioem_param::readParameters(const char* fileinput,const char* fileangles)
if(not(yesSTEnv)){cout<<"**** INPUT MISSING: Please provide START_ENVELOPE \n";exit(1);};
if(not(yesSTamp)){cout<<"**** INPUT MISSING: Please provide START_PSF_AMP \n";exit(1);};
if(not(yesSTpha)){cout<<"**** INPUT MISSING: Please provide START_PSF_PHASE \n";exit(1);};
if(not(yesGSPamp)){cout<<"**** INPUT MISSING: Please provide GRIDSPACE_PSF_AMP \n";exit(1);};
if(not(yesGSPEnv)){cout<<"**** INPUT MISSING: Please provide GRIDSPACE_ENVELOPE \n";exit(1);};
if(not(yesGSPpha)){cout<<"**** INPUT MISSING: Please provide GRIDSPACE_PSF_PHASE \n";exit(1);};
if(not(yesGSPamp)){cout<<"**** INPUT MISSING: Please provide END_PSF_AMP \n";exit(1);};
if(not(yesGSPEnv)){cout<<"**** INPUT MISSING: Please provide END_ENVELOPE \n";exit(1);};
if(not(yesGSPpha)){cout<<"**** INPUT MISSING: Please provide END_PSF_PHASE \n";exit(1);};
if(not(yesMDC)){cout<<"**** INPUT MISSING: Please provide MAX_D_CENTER \n";exit(1);};
if(not(yesGCen)){cout<<"**** INPUT MISSING: Please provide PIXEL_GRID_CENTER \n";exit(1);};
if(param_device.writeCC&¶m_device.CCdisplace<1){cout<<"**** INPUT MISSING: Please provide CROSSCOR_DISPLACE \n";exit(1);};
...
...
@@ -344,27 +345,8 @@ int bioem_param::readParameters(const char* fileinput,const char* fileangles)
if(param_device.flipped){cout<<"Remark:: Micrographs are Flipped = Particles are white\n";}else{cout<<"Remark:: Micrographs are NOT Flipped = Particles are dark\n";}