@@ -46,8 +46,10 @@ Details for the inputfiles and formats are provided in chapters 1 and 2 of the B
### Output
* Main output file with, default name "Output_Probabilities" has
* Main output file with, default name "Output_Probabilities", provides the posterior probability for each image, as well as the paramters that give a maximum value of the posterior:
RefMap #(number Particle Map) Probability #(log(P))
**Important: It is recommended to compare log(P) with respect to other Models or to Noise as in [1].
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@@ -57,7 +59,7 @@ Details for the inputfiles and formats are provided in chapters 1 and 2 of the B
### Tutorial
A directory with example EM particles, models, and input files are provided in the Tutorial_BioEM directory.
A tutorial is provided in chapter 4 of the BioEM_Manual.pdf
The tutorial is described in chapter 4 of the BioEM_Manual.pdf
### Installation
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@@ -109,6 +111,10 @@ For details on the installation chapter 1 of the BioEM_Manual.pdf.
### Performance Variables
The BioEM performance variables enhance or modify the code's computational performance without modifying the numerical results.
They should be tuned for the specific computing node characteristics where BioEM is executed, e.g., select the number of GPUs to use, OpenMP
They should be tuned for the specific computing node characteristics where bioEM is executed, e.g., select the number of GPUs to use, OpenMP
threads etc. These are passed via environment variables. See chapter 3 of the BioEM_Manual.pdf for a detailed description.
### License
The BioEM program is a free software, under the terms of the GNU General Public License as published by the Free Software Foundation, version 3 of the License.
This program is distributed in the hope that it will be useful, but without any warranty. See License.txt for more details.
