Commit 739090fd authored by Markus Rampp's avatar Markus Rampp

Merge branch 'master' of gitlab.mpcdf.mpg.de:MPIBP-Hummer/BioEM

* 'master' of gitlab.mpcdf.mpg.de:MPIBP-Hummer/BioEM:
  Delete Compare_LogP
  Delete COORDREAD
  Delete QUATERNION_LIST_5000_Orient
  Delete QUATERNION_LIST_1700_Orient
  Delete CTF_PSF_Manual.eps
  Fig Manual cor
  Fixing Norm in B prior
parents a722f35e 32ba5ce7
Pipeline #5386 passed with stage
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%!PS-Adobe-2.0 EPSF-2.0
%%Title: ModComp.eps
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%%CreationDate: Tue Jun 14 16:31:31 2016
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......@@ -48,7 +48,7 @@ SDict begin [
/Author (Pilar Cossio,MBP, ,)
% /Producer (gnuplot)
% /Keywords ()
/CreationDate (Wed Jun 8 14:14:44 2016)
/CreationDate (Tue Jun 14 16:31:31 2016)
/DOCINFO pdfmark
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} ifelse
......@@ -566,26 +566,26 @@ LTb
2.600 UP
1.000 UL
LT0
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......@@ -884,9 +884,9 @@ LT3
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......@@ -894,9 +894,9 @@ LT3
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stroke
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......@@ -1313,9 +1313,13 @@ int bioem_param::CalculateRefCTF()
// ********** Calculating normalized volumen element *********
if(!printModel){
param_device.volu = voluang * (myfloat_t) param_device.GridSpaceCenter * pixelSize * (myfloat_t) param_device.GridSpaceCenter * pixelSize
* gridCTF_phase * gridCTF_amp * gridEnvelop / ((2.f * (myfloat_t) param_device.maxDisplaceCenter+1.)) / (2.f * (myfloat_t) (param_device.maxDisplaceCenter + 1.)) / ((myfloat_t) numberGridPointsCTF_amp * gridCTF_amp )
/ ((myfloat_t) numberGridPointsCTF_phase * gridCTF_phase) / ((myfloat_t) numberGridPointsEnvelop * gridEnvelop ) / sqrt(2 * M_PI ) / param_device.sigmaPriorbctf ;
// All priors (uniform or not) normalized to 1
// The volume is the grid-spacing of the parameter / normalization
// the order is angles, displacement, ctf amplitud (all uniform) then env b & phase (non uniform) the sqrt(2) cancel out (see SI)
param_device.volu = voluang *
(myfloat_t) param_device.GridSpaceCenter * pixelSize * (myfloat_t) param_device.GridSpaceCenter * pixelSize / ((2.f * (myfloat_t) param_device.maxDisplaceCenter+1.)) / (2.f * (myfloat_t) (param_device.maxDisplaceCenter + 1.))
/ (myfloat_t) numberGridPointsCTF_amp
* gridEnvelop * gridCTF_phase / M_PI / param_device.sigmaPriorbctf / param_device.sigmaPriordefo ;
// cout << "VOLU " << param_device.volu << " " << gridCTF_amp << "\n";
// *** Number of total pixels***
......
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