Minor corrections manual

doc/index.rst

@@ -26,7 +26,7 @@ Welcome to BioEM's documentation!
 
 :Authors:
 
-   P.Cossio, D. Rohr, Fabio Baruffa, Luka Stanisic, Markus Rampp, V. Lindestruth, G. Hummer
+   P. Cossio, D. Rohr, F. Baruffa, L. Stanisic, M. Rampp, V. Lindestruth, G. Hummer
 
 :Organization:
 
@@ -400,7 +400,7 @@ input-parameter file. Lastly, we describe the specific formats of the
 model, particle-image, and input-parameter files that are used in the
 BioEM software.
 
-Commandline Input
+Commandline input
 -----------------
 
 The BioEM software requires a model, a set of experimental images and
@@ -537,7 +537,7 @@ of the posterior (see section :ref:`anaout` for its format).
 
 .. _inparam:
 
-Input of Physical Parameters
+Input of physical parameters
 ----------------------------
 
 Up to now, we have seen several commandline inputs that can be used in
@@ -928,7 +928,7 @@ Optional keywords:
 -  :inpar:`WRITE_PROB_ANGLES` ``(int)``: To write out the posterior as
    a function of the best ``(int)`` orientation.
 
-File Formats
+File formats
 ------------
 
 .. _modformat:
@@ -2132,7 +2132,7 @@ BioEM:
 
 .. _modcom:
 
-Example: Model comparison using BioEM
+Example: model comparison using BioEM
 -------------------------------------
 
 BioEM should be used for model comparison and ranking. Here, we provide