Commit 65055f01 authored by Luka Stanisic's avatar Luka Stanisic
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doc rst: improving new documentation format

parent dc0dc881
@Article{Plancherel,
Title = {{Contribution à l'étude de la représentation d'une fonction arbitraire par les intégrales définies}},
Author = {Plancherel, Michel and Mittag-Leffler},
Journal = {{Rendiconti del Circolo Matematico di Palermo}},
Year = {{1910}},
Number = {{1}},
Pages = {{289-335}},
Volume = {{30}},
}
@Article{Bai2015,
Title = {{How cryo-EM is revolutionizing structural biology}},
Author = {Bai, Xiao-Chen and McMullan, Greg and Scheres, Sjors H. W.},
Journal = {{Trends in Biochemical Sciences}},
Year = {{2015}},
Month = {{JAN}},
Number = {{1}},
Pages = {{49-57}},
Volume = {{40}},
Doi = {{10.1016/j.tibs.2014.10.005}},
ISSN = {{0968-0004}},
Unique-id = {{ISI:000347862900007}}
}
@InCollection{NEwREV-ELad,
Title = {{Cryogenic Electron Microscopy and Single-Particle Analysis}},
Author = {Elmlund, Dominika and Elmlund, Hans},
Booktitle = {{Annual Review of Biochemistry, Vol. 84}},
Year = {{2015}},
Editor = {{Kornberg, RD}},
Pages = {{499-517}},
Series = {{Annual Review of Biochemistry}},
Volume = {{84}},
Doi = {{10.1146/annurev-biochem-060614-034226}},
ISBN = {{978-0-8243-0884-1}},
ISSN = {{0066-4154}},
Orcid-numbers = {{Elmlund, Hans/0000-0002-6992-0601}},
Researcherid-numbers = {{Elmlund, Hans/}},
Unique-id = {{ISI:000355765300019}}
}
@article{Penczek_2010,
Author = {Penczek, Pawel A.},
Title = {{Image Restoration in Cryo-Electron Microscopy}},
Journal = {{Methods in Enzymology}},
Year = {{2010}},
Volume = {{482}},
Pages = {{35-72}}
}
@Article{AllegrettiNAT2015,
Title = {{Horizontal membrane-intrinsic alpha-helices in the stator a-subunit of an F-type ATP synthase}},
Author = {Allegretti, Matteo and Klusch, Niklas and Mills, Deryck J. and Vonck, Janet and Kuehlbrandt, Werner and Davies, Karen M.},
Journal = {{Nature}},
Year = {{2015}},
Month = {{MAY 14}},
Number = {{7551}},
Pages = {{237+}},
Volume = {{521}},
Abstract = {{ATP, the universal energy currency of cells, is produced by F-type ATP synthases, which are ancient, membrane-bound nanomachines. F-type ATP synthases use the energy of a transmembrane electrochemical gradient to generate ATP by rotary catalysis. Protons moving across the membrane drive a rotor ring composed of 8-15 c-subunits(1). A central stalk transmits the rotation of the c-ring to the catalytic F-1 head, where a series of conformational changes results in ATP synthesis(2). A key unresolved question in this fundamental process is how protons pass through the membrane to drive ATP production. Mitochondrial ATP synthases form V-shaped homodimers in cristae membranes(3). Here we report the structure of a native and active mitochondrial ATP synthase dimer, determined by single-particle electron cryomicroscopy at 6.2 angstrom resolution. Our structure shows four long, horizontal membrane-intrinsic alpha-helices in the a-subunit, arranged in two hairpins at an angle of approximately 70 degrees relative to the c-ring helices. It has been proposed that a strictly conserved membrane-embedded arginine in the a-subunit couples proton translocation to c-ring rotation(4). A fit of the conserved carboxy-terminal a-subunit sequence places the conserved arginine next to a proton-binding c-subunit glutamate. The map shows a slanting solvent-accessible channel that extends from the mitochondrial matrix to the conserved arginine. Another hydrophilic cavity on the lumenal membrane surface defines a direct route for the protons to an essential histidine-glutamate pair(5). Our results provide unique new insights into the structure and function of rotary ATP synthases and explain how ATP production is coupled to proton translocation.}},
Address = {{MACMILLAN BUILDING, 4 CRINAN ST, LONDON N1 9XW, ENGLAND}},
Affiliation = {{Kuhlbrandt, W (Reprint Author), Max Planck Inst Biophys, Dept Struct Biol, Max von Laue Str 3, D-60438 Frankfurt, Germany. Allegretti, Matteo; Klusch, Niklas; Mills, Deryck J.; Vonck, Janet; Kuehlbrandt, Werner; Davies, Karen M., Max Planck Inst Biophys, Dept Struct Biol, D-60438 Frankfurt, Germany.}},
Author-email = {{werner.kuehlbrandt@biophys.mpg.de karen.davies@biophys.mpg.de}},
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Doc-delivery-number = {{CH9SY}},
Doi = {{10.1038/nature14185}},
Eissn = {{1476-4687}},
Funding-acknowledgement = {{Max Planck Society; Deutsche Forschungsgemeinschaft Cluster of Excellence Frankfurt `Macromolecular Complexes'}},
Funding-text = {{We thank T. Meier and J. D. Faraldo-Gomez for discussions and reading the manuscript. O. Yildiz and J. F. Castillo-Hernandez provided computer support. This work was funded by the Max Planck Society (M.A., N.K., D.J.M., J.V., K.M.D., W.K.) and the Deutsche Forschungsgemeinschaft Cluster of Excellence Frankfurt `Macromolecular Complexes' (K.M.D., W.K.).}},
ISSN = {{0028-0836}},
Journal-iso = {{Nature}},
Keywords-plus = {{ESSENTIAL ARGININE RESIDUE; POLYTOMELLA SP; CROSS-LINKING; C-RING; CHLAMYDOMONAS-REINHARDTII; ELECTRON-MICROSCOPY; F0F1-ATP SYNTHASE; PROTON CHANNEL; CRYO-EM; RESOLUTION}},
Language = {{English}},
Number-of-cited-references = {{45}},
Publisher = {{NATURE PUBLISHING GROUP}},
Research-areas = {{Science \& Technology - Other Topics}},
Times-cited = {{1}},
Type = {{Article}},
Unique-id = {{ISI:000354377800062}},
Web-of-science-categories = {{Multidisciplinary Sciences}}
}
@Article{Yershova2010,
Title = {{Generating Uniform Incremental Grids on SO(3) Using the Hopf Fibration}},
Author = {Yershova, Anna and Jain, Swati and LaValle, Steven M. and Mitchell, Julie C.},
Journal = {{Int. J. Robot. Res.}},
Year = {{2010}},
Month = {{JUN}},
Number = {{7}},
Pages = {{801-812}},
Volume = {{29}},
Doi = {{10.1177/0278364909352700}},
ISSN = {{0278-3649}},
Unique-id = {{ISI:000277911900003}}
}
@article{ E_doseCheng,
Publication-Type = {{J}},
Type = {{Journal Paper}},
Title = {{Influence of electron dose rate on electron counting images recorded
with the K2 camera}},
Author = {{Xueming Li} and Zheng, S.Q. and Egami, K. and Agard, D.A. and {Yifan
Cheng}},
Journal = {{J. Struct. Biol.}},
Month = {{Nov.}},
Year = {{2013}},
Volume = {{184}},
Issue = {{2}},
Pages = {{251-60}},
Publisher = {{Academic Press Inc.}},
Address = {{USA}},
Language = {{English}},
Affiliation = {{Xueming Li; Zheng, S.Q.; Egami, K.; Agard, D.A.; Yifan Cheng; Dept. of
Biochem. \& Biophys., Univ. of California San Francisco, San Francisco,
CA, USA..}},
ISSN = {{1047-8477}},
Number-of-References = {{30}},
Identifying-Codes = {{[S1047-8477(13)00211-6],[10.1016/j.jsb.2013.08.005]}},
Unique-ID = {{INSPEC:14249667}},
}

@article{ ResolRev_Kuelbrandt,
Author = {K\"uhlbrandt, Werner},
Title = {{The Resolution Revolution}},
Journal = {{Science}},
Year = {{2014}},
Volume = {{343}},
Number = {{6178}},
Pages = {{1443-1444}},
Month = {{MAR 28}},
Publisher = {{AMER ASSOC ADVANCEMENT SCIENCE}},
Address = {{1200 NEW YORK AVE, NW, WASHINGTON, DC 20005 USA}},
Type = {{Editorial Material}},
Language = {{English}},
Affiliation = {{Kuhlbrandt, W (Reprint Author), Max Planck Inst Biophys, Dept Biol Struct, D-60538 Frankfurt, Germany.
Max Planck Inst Biophys, Dept Biol Struct, D-60538 Frankfurt, Germany.}},
DOI = {{10.1126/science.1251652}},
ISSN = {{0036-8075}},
EISSN = {{1095-9203}},
Keywords-Plus = {{LARGE RIBOSOMAL-SUBUNIT; ANGSTROM RESOLUTION; CRYO-EM}},
Research-Areas = {{Science \& Technology - Other Topics}},
Web-of-Science-Categories = {{Multidisciplinary Sciences}},
Author-Email = {{werner.kuehlbrandt@biophys.mpg.de}},
Number-of-Cited-References = {{11}},
Times-Cited = {{9}},
Journal-ISO = {{Science}},
Doc-Delivery-Number = {{AD7TZ}},
Unique-ID = {{ISI:000333471000024}},
}

@article{ DEDcamera,
Author = {Faruqi, A. R. and Henderson, R.},
Title = {{Electronic detectors for electron microscopy}},
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Unique-ID = {{ISI:000251348200009}},
}

@article{ Ribo_scheres,
Author = {Brown, Alan and Amunts, Alexey and Bai, Xiao-chen and Sugimoto, Yoichiro
and Edwards, Patricia C. and Murshudov, Garib and Scheres, Sjors H. W.
and Ramakrishnan, V.},
Title = {{Structure of the large ribosomal subunit from human mitochondria}},
Journal = {{Science}},
Year = {{2014}},
Volume = {{346}},
Number = {{6210}},
Pages = {{718-722}},
Month = {{NOV 7}},
DOI = {{10.1126/science.1258026}},
ISSN = {{0036-8075}},
EISSN = {{1095-9203}},
Unique-ID = {{ISI:000344690100032}},
}

@article{ Ionchannel_Cheng,
Author = {Liao, Maofu and Cao, Erhu and Julius, David and Cheng, Yifan},
Title = {{Structure of the TRPV1 ion channel determined by electron
cryo-microscopy}},
Journal = {{Nature}},
Year = {{2013}},
Volume = {{504}},
Number = {{7478}},
Pages = {{107+}},
Month = {{DEC 5}},
DOI = {{10.1038/nature12822}},
ISSN = {{0028-0836}},
EISSN = {{1476-4687}},
ResearcherID-Numbers = {{Albert, Joerg/C-3656-2009}},
Unique-ID = {{ISI:000327851700040}},
}

@article{ RyR1_Yan,
Author = {Yan, Zhen and Bai, Xiao-chen and Yan, Chuangye and Wu, Jianping and Li,
Zhangqiang and Xie, Tian and Peng, Wei and Yin, Chang-cheng and Li,
Xueming and Scheres, Sjors H. W. and Shi, Yigong and Yan, Nieng},
Title = {{Structure of the rabbit ryanodine receptor RyR1 at near-atomic
resolution}},
Journal = {{Nature}},
Year = {{2015}},
Volume = {{517}},
Number = {{7532}},
Pages = {{50+}},
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DOI = {{10.1038/nature14063}},
ISSN = {{0028-0836}},
EISSN = {{1476-4687}},
Unique-ID = {{ISI:000347178400032}},
}

@article{ Riob2_scheres,
Author = {Brown, Alan and Amunts, Alexey and Bai, Xiao-chen and Sugimoto, Yoichiro
and Edwards, Patricia C. and Murshudov, Garib and Scheres, Sjors H. W.
and Ramakrishnan, V.},
Title = {{Structure of the large ribosomal subunit from human mitochondria}},
Journal = {{Science}},
Year = {{2014}},
Volume = {{346}},
Number = {{6210}},
Pages = {{718-722}},
Month = {{NOV 7}},
DOI = {{10.1126/science.1258026}},
ISSN = {{0036-8075}},
EISSN = {{1095-9203}},
Unique-ID = {{ISI:000344690100032}},
}

@article{ Gamma_sec_Scheres,
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Chuangye and Sun, Linfeng and Yang, Guanghui and Zhao, Yanyu and Zhou,
Rui and Scheres, Sjors H. W. and Shi, Yigong},
Title = {{Three-dimensional structure of human gamma-secretase}},
Journal = {{Nature}},
Year = {{2014}},
Volume = {{512}},
Number = {{7513}},
Pages = {{166+}},
Month = {{AUG 14}},
DOI = {{10.1038/nature13567}},
ISSN = {{0028-0836}},
EISSN = {{1476-4687}},
Unique-ID = {{ISI:000340200700025}},
}
@incollection{ rev_ML-10,
Author = {Sigworth, Fred J. and Doerschuk, Peter C. and Carazo, Jose-Maria and
Scheres, Sjors H. W.},
Editor = {{Jensen, GJ}},
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Volume = {{482}},
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DOI = {{10.1016/S0076-6879(10)82011-7}},
ISSN = {{0076-6879}},
ISBN = {{978-0-12-384991-5}},
Times-Cited = {{2}},
Unique-ID = {{ISI:000283462200010}},
}
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Times-Cited = {{49}},
Unique-ID = {{ISI:000250235900007}},
}
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Mert and Stewart, Phoebe L. and Meiler, Jens},
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Times-Cited = {{15}},
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}
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Heymann, Bernard/F-6825-2011}},
Times-Cited = {{19}},
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}
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Times-Cited = {{4}},
Unique-ID = {{ISI:000178144400001}},
}
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Author = {Jaitly, Navdeep and Brubaker, Marcus A. and Rubinstein, John L. and
Lilien, Ryan H.},
Title = {{A Bayesian method for 3D macromolecular structure inference using class
average images from single particle electron microscopy}},
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Times-Cited = {{3}},
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}
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