rel2: code development

CMakeLists.txt

autotuner.cpp

bioem.cpp

bioem_algorithm.h

bioem_cuda.cu

include/autotuner.h

include/bioem.h

include/bioem_cuda.h

include/bioem_cuda_internal.h

include/defs.h

include/map.h

include/model.h

include/param.h

include/timer.h

main.cpp

map.cpp

model.cpp

param.cpp

timer.cpp