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Commit 244a3278 authored by Pilar Cossio's avatar Pilar Cossio
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=======================
Authors of BioEM
=======================
*** v1.0 in 2016
Pilar Cossio
David Rohr
Fabio Barruffa
Markus Rampp
Volker Lindenstruth
Gerhard Hummer
bioem.cpp
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...@@ -2,8 +2,12 @@ ...@@ -2,8 +2,12 @@
< BioEM software for Bayesian inference of Electron Microscopy images> < BioEM software for Bayesian inference of Electron Microscopy images>
Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp,
Volker Lindenstruth and Gerhard Hummer. Volker Lindenstruth and Gerhard Hummer.
Max Planck Institute of Biophysics, Frankfurt, Germany. Max Planck Institute of Biophysics, Frankfurt, Germany.
Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
Max Planck Computing and Data Facility, Garching, Germany.
Released under the GNU Public License, v3.
See license statement for terms of distribution. See license statement for terms of distribution.
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/
...@@ -42,7 +46,6 @@ ...@@ -42,7 +46,6 @@
#include "bioem.h" #include "bioem.h"
#include "model.h" #include "model.h"
#include "map.h" #include "map.h"
#include "MersenneTwister.h"
#ifdef BIOEM_USE_NVTX #ifdef BIOEM_USE_NVTX
#include "nvToolsExt.h" #include "nvToolsExt.h"
......
bioem_algorithm.h
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Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp,
Volker Lindenstruth and Gerhard Hummer. Volker Lindenstruth and Gerhard Hummer.
Max Planck Institute of Biophysics, Frankfurt, Germany. Max Planck Institute of Biophysics, Frankfurt, Germany.
Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
Max Planck Computing and Data Facility, Garching, Germany.
Released under the GNU Public License, v3.
See license statement for terms of distribution. See license statement for terms of distribution.
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/
......
include/bioem.h
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Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp,
Volker Lindenstruth and Gerhard Hummer. Volker Lindenstruth and Gerhard Hummer.
Max Planck Institute of Biophysics, Frankfurt, Germany. Max Planck Institute of Biophysics, Frankfurt, Germany.
Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
Max Planck Computing and Data Facility, Garching, Germany.
Released under the GNU Public License, v3.
See license statement for terms of distribution. See license statement for terms of distribution.
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/
......
include/bioem_cuda.h
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...@@ -3,7 +3,10 @@ ...@@ -3,7 +3,10 @@
Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp,
Volker Lindenstruth and Gerhard Hummer. Volker Lindenstruth and Gerhard Hummer.
Max Planck Institute of Biophysics, Frankfurt, Germany. Max Planck Institute of Biophysics, Frankfurt, Germany.
Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
Max Planck Computing and Data Facility, Garching, Germany.
Released under the GNU Public License, v3.
See license statement for terms of distribution. See license statement for terms of distribution.
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/
......
include/bioem_cuda_internal.h
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...@@ -3,7 +3,10 @@ ...@@ -3,7 +3,10 @@
Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp,
Volker Lindenstruth and Gerhard Hummer. Volker Lindenstruth and Gerhard Hummer.
Max Planck Institute of Biophysics, Frankfurt, Germany. Max Planck Institute of Biophysics, Frankfurt, Germany.
Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
Max Planck Computing and Data Facility, Garching, Germany.
Released under the GNU Public License, v3.
See license statement for terms of distribution. See license statement for terms of distribution.
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/
......
include/defs.h
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...@@ -3,7 +3,10 @@ ...@@ -3,7 +3,10 @@
Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp,
Volker Lindenstruth and Gerhard Hummer. Volker Lindenstruth and Gerhard Hummer.
Max Planck Institute of Biophysics, Frankfurt, Germany. Max Planck Institute of Biophysics, Frankfurt, Germany.
Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
Max Planck Computing and Data Facility, Garching, Germany.
Released under the GNU Public License, v3.
See license statement for terms of distribution. See license statement for terms of distribution.
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/
......
include/map.h
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...@@ -3,7 +3,10 @@ ...@@ -3,7 +3,10 @@
Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp,
Volker Lindenstruth and Gerhard Hummer. Volker Lindenstruth and Gerhard Hummer.
Max Planck Institute of Biophysics, Frankfurt, Germany. Max Planck Institute of Biophysics, Frankfurt, Germany.
Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
Max Planck Computing and Data Facility, Garching, Germany.
Released under the GNU Public License, v3.
See license statement for terms of distribution. See license statement for terms of distribution.
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/
......
include/model.h
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...@@ -3,7 +3,10 @@ ...@@ -3,7 +3,10 @@
Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp,
Volker Lindenstruth and Gerhard Hummer. Volker Lindenstruth and Gerhard Hummer.
Max Planck Institute of Biophysics, Frankfurt, Germany. Max Planck Institute of Biophysics, Frankfurt, Germany.
Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
Max Planck Computing and Data Facility, Garching, Germany.
Released under the GNU Public License, v3.
See license statement for terms of distribution. See license statement for terms of distribution.
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/
......
include/param.h
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...@@ -3,7 +3,10 @@ ...@@ -3,7 +3,10 @@
Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp,
Volker Lindenstruth and Gerhard Hummer. Volker Lindenstruth and Gerhard Hummer.
Max Planck Institute of Biophysics, Frankfurt, Germany. Max Planck Institute of Biophysics, Frankfurt, Germany.
Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
Max Planck Computing and Data Facility, Garching, Germany.
Released under the GNU Public License, v3.
See license statement for terms of distribution. See license statement for terms of distribution.
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/
......
main.cpp
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...@@ -3,7 +3,7 @@ ...@@ -3,7 +3,7 @@
Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp,
Volker Lindenstruth and Gerhard Hummer. Volker Lindenstruth and Gerhard Hummer.
Max Planck Institute of Biophysics, Frankfurt, Germany. Max Planck Institute of Biophysics, Frankfurt, Germany.
Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany. Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
Max Planck Computing and Data Facility, Garching, Germany. Max Planck Computing and Data Facility, Garching, Germany.
......
map.cpp
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...@@ -3,13 +3,16 @@ ...@@ -3,13 +3,16 @@
Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp,
Volker Lindenstruth and Gerhard Hummer. Volker Lindenstruth and Gerhard Hummer.
Max Planck Institute of Biophysics, Frankfurt, Germany. Max Planck Institute of Biophysics, Frankfurt, Germany.
Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
Max Planck Computing and Data Facility, Garching, Germany.
Released under the GNU Public License, v3.
See license statement for terms of distribution. See license statement for terms of distribution.
Note: This program contains subroutine "read_MRC" of the Situs 2.7.2 program. Note: This program contains subroutine "read_MRC" of the Situs 2.7.2 program.
Ref: Willy Wriggers. Using Situs for the Integration of Multi-Resolution Structures. Ref: Willy Wriggers. Using Situs for the Integration of Multi-Resolution Structures.
Biophysical Reviews, 2010, Vol. 2, pp. 21-27. Biophysical Reviews, 2010, Vol. 2, pp. 21-27.
with a GPL lisences version XX. with a GPL lisences version 3.
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/
......
model.cpp
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...@@ -3,7 +3,10 @@ ...@@ -3,7 +3,10 @@
Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp,
Volker Lindenstruth and Gerhard Hummer. Volker Lindenstruth and Gerhard Hummer.
Max Planck Institute of Biophysics, Frankfurt, Germany. Max Planck Institute of Biophysics, Frankfurt, Germany.
Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
Max Planck Computing and Data Facility, Garching, Germany.
Released under the GNU Public License, v3.
See license statement for terms of distribution. See license statement for terms of distribution.
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/
......
param.cpp
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...@@ -3,7 +3,10 @@ ...@@ -3,7 +3,10 @@
Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp,
Volker Lindenstruth and Gerhard Hummer. Volker Lindenstruth and Gerhard Hummer.
Max Planck Institute of Biophysics, Frankfurt, Germany. Max Planck Institute of Biophysics, Frankfurt, Germany.
Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
Max Planck Computing and Data Facility, Garching, Germany.
Released under the GNU Public License, v3.
See license statement for terms of distribution. See license statement for terms of distribution.
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/
......
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