License at top each file

Authors.txt

+=======================
+ Authors of BioEM
+=======================
+
+*** v1.0 in 2016
+
+Pilar Cossio
+David Rohr
+Fabio Barruffa
+Markus Rampp
+Volker Lindenstruth
+Gerhard Hummer

bioem.cpp

@@ -2,8 +2,12 @@
    < BioEM software for Bayesian inference of Electron Microscopy images>
    Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, 
 	Volker Lindenstruth and Gerhard Hummer.
+
    Max Planck Institute of Biophysics, Frankfurt, Germany.
+   Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
+   Max Planck Computing and Data Facility, Garching, Germany. 
 
+   Released under the GNU Public License, v3. 
    See license statement for terms of distribution.
 
    ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/
@@ -42,7 +46,6 @@
 #include "bioem.h"
 #include "model.h"
 #include "map.h"
-#include "MersenneTwister.h"
 
 #ifdef BIOEM_USE_NVTX
 #include "nvToolsExt.h"

bioem_algorithm.h

@@ -3,7 +3,10 @@
    Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, 
         Volker Lindenstruth and Gerhard Hummer.
    Max Planck Institute of Biophysics, Frankfurt, Germany.
+   Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
+   Max Planck Computing and Data Facility, Garching, Germany. 
 
+   Released under the GNU Public License, v3. 
    See license statement for terms of distribution.
 
    ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/

include/bioem.h

@@ -3,7 +3,10 @@
    Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, 
         Volker Lindenstruth and Gerhard Hummer.
    Max Planck Institute of Biophysics, Frankfurt, Germany.
+   Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
+   Max Planck Computing and Data Facility, Garching, Germany. 
 
+   Released under the GNU Public License, v3. 
    See license statement for terms of distribution.
 
    ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/

include/bioem_cuda.h

@@ -3,7 +3,10 @@
    Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, 
         Volker Lindenstruth and Gerhard Hummer.
    Max Planck Institute of Biophysics, Frankfurt, Germany.
+   Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
+   Max Planck Computing and Data Facility, Garching, Germany. 
 
+   Released under the GNU Public License, v3. 
    See license statement for terms of distribution.
 
    ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/

include/bioem_cuda_internal.h

@@ -3,7 +3,10 @@
    Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, 
         Volker Lindenstruth and Gerhard Hummer.
    Max Planck Institute of Biophysics, Frankfurt, Germany.
+   Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
+   Max Planck Computing and Data Facility, Garching, Germany. 
 
+   Released under the GNU Public License, v3. 
    See license statement for terms of distribution.
 
    ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/

include/defs.h

@@ -3,7 +3,10 @@
    Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, 
         Volker Lindenstruth and Gerhard Hummer.
    Max Planck Institute of Biophysics, Frankfurt, Germany.
+   Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
+   Max Planck Computing and Data Facility, Garching, Germany. 
 
+   Released under the GNU Public License, v3. 
    See license statement for terms of distribution.
 
    ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/

include/map.h

@@ -3,7 +3,10 @@
    Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, 
         Volker Lindenstruth and Gerhard Hummer.
    Max Planck Institute of Biophysics, Frankfurt, Germany.
+   Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
+   Max Planck Computing and Data Facility, Garching, Germany. 
 
+   Released under the GNU Public License, v3. 
    See license statement for terms of distribution.
 
    ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/

include/model.h

@@ -3,7 +3,10 @@
    Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, 
         Volker Lindenstruth and Gerhard Hummer.
    Max Planck Institute of Biophysics, Frankfurt, Germany.
+   Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
+   Max Planck Computing and Data Facility, Garching, Germany. 
 
+   Released under the GNU Public License, v3. 
    See license statement for terms of distribution.
 
    ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/

include/param.h

@@ -3,7 +3,10 @@
    Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, 
         Volker Lindenstruth and Gerhard Hummer.
    Max Planck Institute of Biophysics, Frankfurt, Germany.
+   Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
+   Max Planck Computing and Data Facility, Garching, Germany. 
 
+   Released under the GNU Public License, v3. 
    See license statement for terms of distribution.
 
    ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/

main.cpp

@@ -3,7 +3,7 @@
    Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, 
         Volker Lindenstruth and Gerhard Hummer.
    
-    Max Planck Institute of Biophysics, Frankfurt, Germany.
+   Max Planck Institute of Biophysics, Frankfurt, Germany.
    Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
    Max Planck Computing and Data Facility, Garching, Germany. 
 

map.cpp

@@ -3,13 +3,16 @@
    Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, 
         Volker Lindenstruth and Gerhard Hummer.
    Max Planck Institute of Biophysics, Frankfurt, Germany.
+   Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
+   Max Planck Computing and Data Facility, Garching, Germany. 
 
+   Released under the GNU Public License, v3. 
    See license statement for terms of distribution.
 
    Note: This program contains subroutine "read_MRC" of the Situs 2.7.2 program. 
    Ref: Willy Wriggers. Using Situs for the Integration of Multi-Resolution Structures. 
    Biophysical Reviews, 2010, Vol. 2, pp. 21-27.
-   with a GPL lisences version XX.
+   with a GPL lisences version 3.
 
 
    ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/

model.cpp

@@ -3,7 +3,10 @@
    Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, 
         Volker Lindenstruth and Gerhard Hummer.
    Max Planck Institute of Biophysics, Frankfurt, Germany.
+   Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
+   Max Planck Computing and Data Facility, Garching, Germany. 
 
+   Released under the GNU Public License, v3. 
    See license statement for terms of distribution.
 
    ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/

param.cpp

@@ -3,7 +3,10 @@
    Copyright (C) 2016 Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, 
         Volker Lindenstruth and Gerhard Hummer.
    Max Planck Institute of Biophysics, Frankfurt, Germany.
+   Frankfurt Institute for Advanced Studies, Goethe University Frankfurt, Germany.
+   Max Planck Computing and Data Facility, Garching, Germany. 
 
+   Released under the GNU Public License, v3. 
    See license statement for terms of distribution.
 
    ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++*/